rs47389524 SNP Detail

Summary

• ID
  rs47389524
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148640636 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGG TGAATTTCTC ACTGCAGATG
  Y
  GGTCTGTCCT TCCTGCTCTA GCTGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss148011298	ENSMUSSNP5844408	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss321421161	CHEV_4_147930288	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs47389524					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148640636 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15305	CpG island 15305	1996 bp proximal
Gm23318	predicted gene, 23318	375 bp downstream
Mtor	mechanistic target of rapamycin kinase	Intron
Rr604703	regulatory region 604703	1760 bp proximal