rs47389491 SNP Detail

Summary

• ID
  rs47389491
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:142148962 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACATATTT ACACTATATA
  TCTTCAGAAT CTGAGAATTA TCAGGGAGGG TCTGTGAGTC TTGGCTTGTA GGAGCCCTCA
  CTCTGGAAAA CGTAGGCAGC GCTGCCCTGA TGGATTTCAG GCTGAGTGAC AGGCTGATGG
  TGAGCTATTT TGGGCAAAGG GGCTCTCATT GCAGCTGCCT GTTTAAGATG AAGGGCAAAG
  K
  TCGCTTGTAC AAGTCTAGCG TTGCCAGCCC ACATGTTTAC TTTCACTTGT AAACACAGTA
  CTTTGTGTCA GACGTTATTT CCTTTGCAAA TCATAGGTGG CACCGTTCTT AGTTATTTGA
  CAACCAATAA AGTATAATGA ATTCTAAATG TTCAGCCAAG CTCACTTGGG AGTTACCTCT
  CTAAACCACT GAGTTTCTAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61087254	NES16608384	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47389491					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61087254	NES16608384	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142148962 () rs orientation: forward

Symbol	Name	Function Class
Gm64781	predicted gene, 64781	within coordinates
Rr586433	regulatory region 586433	720 bp distal
Rr586434	regulatory region 586434	within coordinates
Rr586435	regulatory region 586435	339 bp proximal