rs47386321 SNP Detail

Summary

• ID
  rs47386321
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151808758 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G CCTTCAGAAG GGCGTGATTT AAGAACTGCG TTTCCAAAGG
  TGGAGAGGTG TTAGACACAC AGGAGACACA CCTCGGGTAG CGGACAATAT ACATGAGAAT
  R
  TGTGAAGTTC GACAGAACAT GCTATGGTCA CCATAAGAAG TCCACAGGCC TGGAGAATAT
  AGTCTGTGAC GAGAACTTAG GGGGCCTGCG CCACGAGAAG G                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136100769	ENSMUSSNP582671	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47386321					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151808758 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gipc2	GIPC PDZ domain containing family, member 2			Intron
				Noncoding-Transcript-Variant
Gm31881	predicted gene, 31881			within coordinates
Gm40179	predicted gene, 40179			940 bp downstream
Rr587451	regulatory region 587451			1450 bp distal
Rr587452	regulatory region 587452			1678 bp proximal