rs47380935 SNP Detail

Summary

• ID
  rs47380935
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:135717418 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGGG GAAAGGCTCC CAACCACAGG
  C
  AGGGGCAGCT CCTAGCTCGC TTTCG                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145546352	ENSMUSSNP2344973	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss319993388	CHEV_1_137686257	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47380935					SNP	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135717418 () rs orientation: forward

Symbol	Name	Function Class
Rr419276	regulatory region 419276	1387 bp distal
Rr419277	regulatory region 419277	1680 bp distal
Rr419278	regulatory region 419278	530 bp distal
Rr419279	regulatory region 419279	712 bp distal
Rr419280	regulatory region 419280	54 bp proximal
Rr419281	regulatory region 419281	325 bp proximal
Tnni1	troponin I, skeletal, slow 1	Intron