rs47378939 SNP Detail

Summary

• ID
  rs47378939
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:113510725 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAGT ACCGTGGCGT GTGCCCTGCG
  A
  GTCCGATGGG GACAACTTGT TTCCT                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss132840922	ENSMUSSNP5319323	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	A/J
rs47378939					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:113510725 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi4077	CpG island 4077			within coordinates
Rr403100	regulatory region 403100			1931 bp downstream
Rr459386	regulatory region 459386			1580 bp distal
Rr459387	regulatory region 459387			1476 bp distal
Rr459388	regulatory region 459388			413 bp distal
Rr459389	regulatory region 459389			within coordinates
Slc39a11	solute carrier family 39 (metal ion transporter), member 11			Intron
				Noncoding-Transcript-Variant
Sstr2	somatostatin receptor 2			Intron
Tssr105751	transcription start site region 105751			553 bp downstream
Tssr105752	transcription start site region 105752			514 bp downstream