rs47378369 SNP Detail

Summary

• ID
  rs47378369
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:134998895 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAGAACGA ACGTCAGGGT
  TTCCAAGGAG GCTCAGTAAA GCAGGGGACC CAGATGTTTG TTGCGTTAAC TTTTCCCTCC
  TTCGCTACGC CCCAAAAGGG AGAGGCGCGG AGAGCAGTCA GAGAAGCGTT TCTAGGCGAA
  GAAGGCAGCT CCAGGGTTTA CAAACTGAGG AGGGCGAGAG GAATGAACCT TTTTAAGCCC
  R
  AGAGAGCGGA GAATTCAGGT TTTCTTTCAA ACCAAACGGG CTTGCCTGCC GAGGTGGCAA
  CAGCAAACGA AAGCGGCCAA AAGGTTGCAT CATGTGAAAA CAGGCGCGCT AGAGAAACAA
  GAAAACCAGA TGGTGGTAAA ACACCGGACA GGAAAACCCA AGTCGGGAAT CTCTGTATTT
  TCCGGAAGCC TTGGGGCATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147543259	ENSMUSSNP7164910	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47378369					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134998895 () rs orientation: forward

Symbol	Name	Function Class
Clic4	chloride intracellular channel 4	Intron
Cpgi15068	CpG island 15068	313 bp proximal
Rr398589	regulatory region 398589	1306 bp upstream
Rr601974	regulatory region 601974	1230 bp distal
Rr601975	regulatory region 601975	within coordinates
Rr601976	regulatory region 601976	73 bp proximal
Rr601977	regulatory region 601977	119 bp proximal
Rr601978	regulatory region 601978	865 bp proximal
Rr601979	regulatory region 601979	1208 bp proximal
Rr601980	regulatory region 601980	1220 bp proximal
Rr601981	regulatory region 601981	1524 bp proximal
Tssr39607	transcription start site region 39607	589 bp upstream
Tssr43972	transcription start site region 43972	416 bp upstream
Tssr43973	transcription start site region 43973	1122 bp downstream
Tssr43974	transcription start site region 43974	1150 bp downstream
Tssr43975	transcription start site region 43975	1170 bp downstream
Tssr43976	transcription start site region 43976	1197 bp downstream
Tssr43977	transcription start site region 43977	1214 bp downstream