rs47374165 SNP Detail

Summary

• ID
  rs47374165
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153084151 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAATTTATA TGCCCCCCCC
  CCTTTTTTTT AATGTCCCAG GCGCTGTTGT CTGTGCTGGT GGTGAATGAA ACAGATAAAT
  CTCATAGGAT TCTTCATTTT AGGAAGACAG ACAATAAAAA GTTTTTAAGT GCGTGCAGAA
  TTTGTACAAG ATGATTCAAA CTGGGGTAAT AAAAGATAAC CAAGGACTCC TAAGAACCAG
  Y
  GGAGGGATGC AACTTAAATG CAGTCGTGGA TCATCATTAT ATAATCCATC CCTTCTCTCA
  ATCCTTGAGT AGCTTGCATT CCTGACCATG GCCATCATCT GATGGCCTGA CCTTGCAAGA
  TTGGCTCCAC TCTTCTCCAC ACCCCTTCTC CCATGGCCCT CTGGCTACAG CCATAGTAAC
  CGGCTTTCTA TTGCTTACAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss147988436	ENSMUSSNP1162568	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs47374165					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153084151 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12482	CpG island 12482	339 bp distal
Plagl2	pleiomorphic adenoma gene-like 2	873 bp upstream
Pofut1	protein O-fucosyltransferase 1	Intron
Rr567588	regulatory region 567588	816 bp distal
Rr567589	regulatory region 567589	643 bp distal
Rr567590	regulatory region 567590	254 bp distal
Tssr20880	transcription start site region 20880	1305 bp downstream
Tssr20881	transcription start site region 20881	1288 bp downstream
Tssr20882	transcription start site region 20882	765 bp downstream
Tssr20883	transcription start site region 20883	628 bp downstream
Tssr20884	transcription start site region 20884	613 bp downstream
Tssr26895	transcription start site region 26895	877 bp upstream
Tssr26896	transcription start site region 26896	837 bp upstream
Tssr26897	transcription start site region 26897	820 bp upstream
Tssr26898	transcription start site region 26898	731 bp upstream
Tssr26899	transcription start site region 26899	507 bp upstream