rs47373932 SNP Detail

Summary

• ID
  rs47373932
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113600331 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G AGCTGGAGCT ACCCAGAGAA ACCCTGTCTT GAAAAACCAA
  AAAGCAAAGG CAGAAGGGGA AATATGGCAA GCCCGTGGAG ATCTTAAGAG AAGAAATTAA
  R
  TTTAAGTACA CTCAAAAAAA AAAAAATATA TATATATATA TGAGGCTCAT GCCTGTAATT
  CCAGCACTCT GGAGTCAGAG GCAGGAGATC ACTCTTAAGT T                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	MSM/Ms
ss133564908	ENSMUSSNP4466529	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J	MSM/Ms
rs47373932					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113600331 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17851	CpG island 17851	301 bp proximal
Rr636555	regulatory region 636555	211 bp proximal
Tssr58233	transcription start site region 58233	618 bp upstream
Tssr58234	transcription start site region 58234	678 bp upstream
Tssr58235	transcription start site region 58235	756 bp upstream
Tssr58236	transcription start site region 58236	1297 bp upstream
Tssr62461	transcription start site region 62461	158 bp downstream
Vhl	von Hippel-Lindau tumor suppressor	624 bp upstream