rs47365253 SNP Detail

Summary

• ID
  rs47365253
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:151271649 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCTCATTC ACGGTTTGCT
  TCTGTGCCTG GGGCATTCTG GGAAGAGCCT GATTTCACCC TGCCAAAGTC TAGCAGCTTC
  AGGTCCACGT GAATCGTGAA TCGCAAACAC CGGAGAGCAA TCAGAAATGC CCAACAGCCC
  TGCCGCATGA AACCAAGAAG TTACAGAGGA AAGGTCGGGA CGAGGAAAAG GCTTTACTCT
  Y
  TCCCATGTGT TTGCATTTGC TTCAAAAAGA TTTCTCTTCT TGGAAGCTAA AAACCCAGAG
  CAACCTTTGC TACCAAGGGA ACAGCTGCGG TAGCTCTTTG AGGATGGCCC CGTTCCAGAA
  CTCAGGTCTG ACAATCCAAG AAACCTCTCT AGCTTTTGGC TCTGAACTGA TCATCACACG
  AAACTGAACG TTCGACAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
ss61101145	NES16603276	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	T	T	C		T	T
ss321026069	CHEV_3_151228976	CHEVERUD	SCREENING_POP	f	SNP							T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
rs47365253					SNP	C	T	C	T	T	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61101145	NES16603276	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151271649 () rs orientation: forward

Symbol	Name	Function Class
Rr587404	regulatory region 587404	within coordinates
Rr587405	regulatory region 587405	596 bp proximal
Rr587406	regulatory region 587406	845 bp proximal