rs47364302 SNP Detail

Summary

• ID
  rs47364302
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:155589235 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCATCAGCT CCACATGAGA
  TTTCATTAGA TAGAATATAG GATGATGGGA GATAAGTAAA ATTCAATATT TTTAATTAAA
  ATTAATGATA TTGTTTGTCT TTCAGATCAT CTCCAGGGCC GTATTTCAAG CAGTACCGTG
  ACTGTTAATT TATGTAACTC AGTCTTAAGC AGGCACTTAG GTTTGGAGGC AAAGTCCTGG
  Y
  CCTGCTGAAG TTTTCTATCT GGAAACTAGA CATTTGGTAT TATTTAGGTG AAATCATGAA
  TATCCGTATT ATTTGCTTTA TTGAGACTCT TCTGATAGCA ATAGATAAGG AGATCTGACA
  AGACAATGCT CCCTTTATGG TACTTTAGCA CCTAAAGCTC TTACCATGGC ACAAAATAGC
  ATAATATATG CTAATACATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss61102469	NES16627789	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T		T	T		C
ss321032722	CHEV_3_155546562	CHEVERUD	SCREENING_POP	f	SNP											C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs47364302					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61102469	NES16627789	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:155589235 () rs orientation: forward

Symbol	Name	Function Class
Rr587941	regulatory region 587941	786 bp distal