rs47358806 SNP Detail

Summary

• ID
  rs47358806
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:19720114 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGGGAATG GAGAGAGGAA
  TGTTGTAGCC TAAAGAACAT CAAAAATATC TCCACATTTC TGAGTTACAG GGTCTTGGAA
  CTGTAGATTC AGAGAGACAG TATCAATTAT CCAATCTGAC CTGTCAACCA CATACACAGC
  ATCTTTTAAA CAATTGTCGT GAGGTTAAGT GGTTCCCATA ACTTTGGTGT TTTGAGGAGC
  R
  TGTATGGTTC ACTAATGGGT AAGACTGCTG ATGGCTTTTC TCCTCCAACA GGGAGCGGCT
  TCCAGTTCGG TTCCACATTG ATCATGTCCT GCAACCAATG TATGAGATCT TAATTCACTA
  GCTAAGCACA CACATGCAGG GGCAAGGTGC ATGTACACAC ACACACACAC ACAGAGAGAG
  AGAGAGAGAA AGGGAGAGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60376631	NES15883838	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47358806					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60376631	NES15883838	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19720114 () rs orientation: forward

Symbol	Name	Function Class
Rr574019	regulatory region 574019	within coordinates
Trim55	tripartite motif-containing 55	Intron