rs47358229 SNP Detail

Summary

• ID
  rs47358229
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:15748754 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGTGAACC ATTTGGTGTT
  ATTCACAAGG TTCATTATTT GGTGAGGTGA AGGCAGGCAG ATGAAACAAG TGCTGGGAAC
  AAGGCTAAGG ATTTTGGTTC AAATAAATGT TAATTGTTAT GCAAGGACAA TGCCCCCCCC
  CCCCCGCATT TAAGGTCCTG TCATCAGAGG GTTTAAAATG ACGAGCTGTG GGTATAGGGG
  M
  GAAAAGACAT GAAGAGGCTT ACAACCAAAG AACAAAAACA AATACTCCAG AAAAGTTTCT
  GTTCTTTCAG ACTCAAGATA AAGGACTAGT TGTGATTGCT CGATAGGAAA TGTGGAAAGA
  TAAGCTCAAA TATAATAACA GAAAATAAGG ATTTACAGAA TGTAAATGGA ACCATTTTAG
  GTGAGATCAG GGCTAAGGGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss133006921	ENSMUSSNP3582117	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs47358229					SNP	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:15748754 () rs orientation: forward

Symbol	Name	Function Class
Mdfic	MyoD family inhibitor domain containing	Intron
Rr626684	regulatory region 626684	207 bp distal
Rr626685	regulatory region 626685	113 bp proximal
Tssr55009	transcription start site region 55009	793 bp upstream