rs47358155 SNP Detail

Summary

• ID
  rs47358155
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141171150 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTATTTATT TAATGTTTAC
  TTAAATTCTA TGAGTATTTT GCCTGCATGC TTGTATGTAT GTCTAATTCC TGCAAATAGC
  AGAAGGCATC AGATCTCTTG AAATTGGAGT CACCATGTGG GTGCCGGGAA TCGAAGCCAA
  GTTCTCTACA AGAGCAAAAG TGTCCTTAAC CTCTGAGCTA TCTCTCCTGC CAGCCCCCTG
  R
  CTTTTACCGT GGTTTTCAAG ATAGAGCTTG TGTAGCAAGC AAGCACTTGT GCCACTGACC
  TGGCCCGCGG GTCAGTAAAC AGGGTCTGAG AGAGAGAGAG TGGGGACAGG GGCAAGAGAC
  GCGAAGAATG GAGACAAGAC AGGCTATCTG ATCAAATCTC ATTTATTGGA AGGCAACTAT
  GGGTATATAT GCACTTGCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147737211	ENSMUSSNP936919	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47358155					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141171150 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15230	CpG island 15230	642 bp proximal
Gm42337	predicted gene, 42337	147 bp downstream
Rr603768	regulatory region 603768	357 bp proximal
Rr603769	regulatory region 603769	826 bp proximal
Rr603770	regulatory region 603770	1266 bp proximal
Tssr40079	transcription start site region 40079	818 bp upstream
Tssr44320	transcription start site region 44320	1590 bp downstream
Zbtb17	zinc finger and BTB domain containing 17	834 bp upstream