rs47353243 SNP Detail

Summary

• ID
  rs47353243
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:8496309 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAGCAAAA TGGGGGGTGG
  AGCACACGGG ACAGCTGAGG CTAGGAAGAC ATGGGAAAGG CCAGTGCTGA GGATGCTGGG
  AGGACATCTG TATGTGGAAA TGCATTCTGA CCACTGAGTC CAGCACAGTT AATAGACATT
  GGAATGGCAT GAGATTTATT AAGAAAAGAA TTATTTCCCC CTCCATAGTT TATTAACAAC
  Y
  GTCTTATTTT AAATGCAGCC AGGAAGGCTG AGTTTGCTAT GAGATCAGGT TTCCTCACTC
  CTCACACCTG GGGAATAACA GCTACTATTG ACTTAACACT CATTCAGACC TGTTGGTCGA
  GACAAGCTAC AATAGAAGAA AACCGGGAAA GATCAGTGGC TCTATCATCC CAGAAAGTGA
  CAGAGCTACA GTGGTCCTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss132970281	ENSMUSSNP1964205	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47353243					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:8496309 () rs orientation: forward

Symbol	Name	Function Class
Gm45062	predicted gene 45062	Intron
Rr626407	regulatory region 626407	459 bp distal