rs47350482 SNP Detail

Summary

• ID
  rs47350482
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:76867666 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATCATTTC CAAAGAATGT
  GACATTTGTT CCTGTCCCTT TCAACTCACA AGGACTTGCA TTGCTGGACC AAGTCTGGCG
  TGGTTAATGG CAAGGGTCCT GCAGATTTCC CAGGCAGGAG GTGGGGGTAG CAGCCAGCCC
  CAAGAGCGCA TGCATGCCTG CTGCCAACTT GTAGAGAGGA GCCAGTGCGT TTTCCAAACG
  Y
  GCCATGAGGC CCGCCATTGC TTTCCACATC TCTGGCCAGA GAAGCACTCT AGCTTCCTGA
  TTCCCTTGTA TAGCAACTAG GTGGCCAGCA CCTTTGCATG TACCAAGAAG GCCCAAGTCC
  AGAGGGGTGT GGCCCCCATG GGCTGGGGAG GAGCCGTGCT GGTGTGGAGA CTGGGTTCTC
  ACACCTGGGA CCCCATTCGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52376012	NES15271665	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47350482					SNP	T	T	T	T	T	T	C	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52376012	NES15271665	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:76867666 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1753	CpG island 1753	634 bp proximal
Rr434375	regulatory region 434375	1767 bp distal
Rr434376	regulatory region 434376	362 bp proximal
Rr434377	regulatory region 434377	821 bp proximal
Rr434378	regulatory region 434378	890 bp proximal
Rr434379	regulatory region 434379	1164 bp proximal
Rr434380	regulatory region 434380	1311 bp proximal
Rr434381	regulatory region 434381	1447 bp proximal
Slc19a1	solute carrier family 19 (folate transporter), member 1	437 bp upstream
Tssr94203	transcription start site region 94203	398 bp upstream
Tssr94204	transcription start site region 94204	426 bp upstream
Tssr94205	transcription start site region 94205	879 bp upstream
Tssr94206	transcription start site region 94206	1408 bp upstream
Tssr94207	transcription start site region 94207	1428 bp upstream
Tssr94208	transcription start site region 94208	1458 bp upstream
Tssr94209	transcription start site region 94209	1472 bp upstream