rs47341788 SNP Detail

Summary

• ID
  rs47341788
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:139341503 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G TACCAGGAGA CCATAGGCCA GATTGAGGTA AGCACTCAAG
  CCAAGGAGCC TGCTATGGGG TCTCTCAGGG ATTGCATAGT TAAGATCCTG GGTGCTCATA
  G
  AAATGCAGGC TTGCAAAATG GGGCAAGTCA GGGTTTGAAG TCAAAAGCCT GGCATTGCAA
  ACCTGTTCTC ATTAGGGTAT TGGTTTCCTA ATCTGTAAAG T                    
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147675989	ENSMUSSNP4961297	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47341788					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:139341503 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15172	CpG island 15172	640 bp proximal
Gm21969	predicted gene 21969	Intron
Iffo2	intermediate filament family orphan 2	Intron
Rr603260	regulatory region 603260	393 bp proximal
Rr603261	regulatory region 603261	1886 bp proximal