rs47338609 SNP Detail

Summary

• ID
  rs47338609
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:112185140 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAGAGCAG ATTCTAACAG
  CTAGTGGAGG AAAAATGCTA CTTCCCCAAG AAGCAAAAGA TATTAACAGG GGATTCCCTA
  GAACTGTAGT GAACTGCTAT GTGGGTACTG GGAAATGAAC TCGGGTCCTC TGCAAGAGCA
  GCAAGTGCTC TTAACCACTG AGCCATCTCT TCATTCCCAA GAGTCTTTTT GACTGTTACC
  T
  CCCCCCCCAC CCCCCGCCCG GCCCCTGCCA TCTTCTTAGG ACCCCGACTT CTGCAGCCAC
  TACTCTACCC TCTGCTTCTA AGTTGAGTTG CTTTAAATTC CAGACAGAAG TGAGAACACA
  CTGTGTCTAC TGTGCCTGAC TCATATCACT GGCGTGATGT TGCCCAGTTA CTTTAATATT
  CTCAACGAAT GACTGAACTC                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss133558877	ENSMUSSNP6184940	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47338609					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:112185140 () rs orientation: forward

Symbol	Name	Function Class
Gm66265	predicted gene, 66265	1327 bp upstream
Rr636305	regulatory region 636305	582 bp distal
Rr636306	regulatory region 636306	730 bp distal
Rr636307	regulatory region 636307	729 bp proximal
Rr636308	regulatory region 636308	781 bp proximal