rs47337074 SNP Detail

Summary

• ID
  rs47337074
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172340573 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTAGC CCAGCCAAAC TAACTGAACA
  M
  CTGAAATCTA AACTCTAGAT GGCGC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss120011686	PARCsnp_1.19921	PARC_SEQ	INBRED	f	SNP			A	C
ss120014601	PARCsnp_1.09970	PARC_SEQ	INBRED	f	SNP			A	C
ss146194033	ENSMUSSNP2475505	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss320125799	CHEV_1_174443137	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs47337074					SNP	C	C	A	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172340573 () rs orientation: forward

Symbol	Name	Function Class
Gm37125	predicted gene, 37125	243 bp upstream
Gm57108	predicted gene, 57108	267 bp downstream
Gm70635	predicted gene, 70635	67 bp upstream
Rr396590	regulatory region 396590	within coordinates
Rr396591	regulatory region 396591	1028 bp upstream
Rr423599	regulatory region 423599	1964 bp distal
Rr423600	regulatory region 423600	1606 bp distal
Rr423601	regulatory region 423601	within coordinates
Rr423602	regulatory region 423602	8 bp proximal
Rr423603	regulatory region 423603	197 bp proximal
Rr423604	regulatory region 423604	998 bp proximal
Rr423605	regulatory region 423605	1133 bp proximal
Rr423606	regulatory region 423606	1902 bp proximal
Tssr302	transcription start site region 302	993 bp downstream
Tssr10235	transcription start site region 10235	239 bp upstream
Tssr10236	transcription start site region 10236	1115 bp upstream
Tssr15228	transcription start site region 15228	927 bp downstream