rs47333641 SNP Detail

Summary

• ID
  rs47333641
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:125510084 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGGCGACAG GAGTTATCCC TATCTTGCAA AGAAAGACCC
  AAAATCTTAG ACAAGTCAGT ACATCAAGCT CTTGACTCTA ACGTTCAACA CTAGCCTTCA
  S
  TGTCTTCCTG ACAGGAGGGT AAAACTCCAC TGGTGGGGGG AGAGGGGCTA ATACCAAGCC
  AGATCATCAT GTAAACTCCA AGCCAGTGGA TTTTTCAAC                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147484327	ENSMUSSNP2870024	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47333641					SNP	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:125510084 () rs orientation: forward

Symbol	Name	Function Class
Rr397269	regulatory region 397269	542 bp downstream
Rr564257	regulatory region 564257	1126 bp distal
Rr564258	regulatory region 564258	559 bp distal
Rr564259	regulatory region 564259	927 bp distal
Rr564260	regulatory region 564260	116 bp distal
Shc4	SHC (Src homology 2 domain containing) family, member 4	Intron