rs47329960 SNP Detail

Summary

• ID
  rs47329960
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:5154760 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAAATGAA TTCAGCCATT
  TTCTTCTCAT CTCTCTGTCA GAGTTTTCAA ATTGAGTCAT TCTCTCCACA ATGTATTTAT
  AGCCCTAAAA ACAGCGGAAT GGAAGGCTAC CCATTCAGAC CTTCTCAGTC AATTTCCCAT
  TTCTGACTTC TGCCAGAGAA AGCCCCAAAA AGCATAAATG CAAATTTTCA GACATTGGTT
  Y
  CACATGAAAT GGGAGTAAGT ACTGCCCCAG CTACTGTTGT GAGACCAGAT AGGGCCACCG
  CTGCCTACAC ATAAAGCCAT TAAGGAGAAG TTGTTTATTT CTGCTTCTGC AGAAATCATA
  AACACCAACC CTGACCCTGA CAGCCCAAGC TGTGCTGCAG TAAATTCTAG TACTTTGTTG
  GCCGTTCTAA GCTGCCCAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60366980	NES15869422	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47329960					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60366980	NES15869422	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:5154760 () rs orientation: forward

Symbol	Name	Function Class
D3Mit61	DNA segment, Chr 3, Massachusetts Institute of Technology 61	1201 bp distal
Gm17308	predicted gene, 17308	576 bp upstream
Rr573165	regulatory region 573165	472 bp distal
Rr573166	regulatory region 573166	2 bp proximal
Rr573167	regulatory region 573167	261 bp proximal
Rr573168	regulatory region 573168	587 bp proximal
Tssr28264	transcription start site region 28264	568 bp upstream