rs47328642 SNP Detail

Summary

• ID
  rs47328642
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37780596 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCAG GTGCTCAAGC TCCAGGCATG
  G
  TCAGGGACCC AGGCTGCTTC CAGGC                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss134812077	ENSMUSSNP2340425	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss320712084	CHEV_3_37625369	CHEVERUD	SCREENING_POP	f	SNP		G	G
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs47328642					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37780596 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13102	CpG island 13102	1780 bp distal
Gm36620	predicted gene, 36620	within coordinates
Rr575550	regulatory region 575550	1467 bp distal
Rr575551	regulatory region 575551	177 bp proximal
Rr575552	regulatory region 575552	1683 bp proximal