rs47319820 SNP Detail

Summary

• ID
  rs47319820
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:141749778 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGCTACCT TTTGCAGAGT
  TGAAAAATTA GTTAGGAAAT CTTAGTATAG TAACACAATC TTAACCTTTG TTTGGTAGCA
  TTTCTGGAAA AATAATAGTT TAAAGTCATA CCCACCCTAC CCCCATTCCC ATGCCAAAGG
  CTTGATGCCT GCTTCACATA ATTTATTGAG AGCAAAGATG GTATGCTAAA CACTGCTCGT
  Y
  CTTGTGGAGA ACAGAAGGCT GGATATGCAA GAAGGAAGGC AGCCATGGGA AAGTACAGAT
  AGAAAAGGAG ATCAAATTTA AGTGACTCCT ACAAAGCTCT CCTGCCAAAG CCACACCTTT
  GTGGGGACTA GAAGACTGTC TCTGTAAAAA TATATAGCTT TTTTTTCCAA ATTATTAGAA
  TGGAAAATAT AAAGGTATAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61089226	NES16604407	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47319820					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61089226	NES16604407	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141749778 () rs orientation: forward

Symbol	Name	Function Class
Bmpr1b	bone morphogenetic protein receptor, type 1B	within coordinates
Rr586379	regulatory region 586379	252 bp distal