rs47307396 SNP Detail

Summary

• ID
  rs47307396
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146556756 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCATACGG AAAAGCAATG
  TCTGTTCCTA AGTCCTGTAA ATGCTGTCTT GAGCTTCAAC GTTGGTAGTG ACTCTCCCTC
  TTGCTTGAGA TTGGAAGAAT GGTGGTCTGA CATGTACGTG TAGTGTGAGG TGTAGGCAGA
  GAGTAATGAT AGTGTAAGAC TGGCATCATG ATCCTCACCC TCACGGAATG CTCCATTGAG
  Y
  TTCTGACTTT GATGTCCCAG CTCTTCTGGG AAACGTCCAT TTACCCCTTT CTGGTCTCCT
  TTTCCACACC AGGGTGACAT CCATCTTAGA TACCCAAATA TCTCTTCTCT TTCATAAAAC
  CCAGTTTTCA CAAGGGTCAG ACTCACACCC AGGTCCCAGT GATAGCTATG TTAAGGTTTA
  CAGTGTATTT CCCCCATCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61097605	NES16606915	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47307396					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61097605	NES16606915	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146556756 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13925	CpG island 13925	1129 bp proximal
Gm65628	predicted gene, 65628	404 bp downstream
Rr587096	regulatory region 587096	876 bp proximal
Rr587097	regulatory region 587097	1377 bp proximal
Rr587098	regulatory region 587098	1655 bp proximal
Tssr32369	transcription start site region 32369	1358 bp upstream
Ttll7	tubulin tyrosine ligase-like family, member 7	1366 bp upstream