rs47303143 SNP Detail

Summary

• ID
  rs47303143
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:141979163 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAATATGAA TCTTTCACAA
  ATAAAATTTT AATACATAAA TATTGAGGCT GTACGATGTA GCTCAGTGGT ACGGCATATG
  CCTGGGATGT ATGACGCCCA GGGACTCATC CCTAGCTCTT CAAACAAACA AAAGTGAATT
  CAATATAGGT TTAAAAAAAT CCCAATTCTG ATAAATAACA AGAAAAAACT CCATTTTTAC
  R
  TACGTCCCTA GGTTCTAGTC ACTGTTTCTA TTTGTGACAG TCATGTGACA CAGGCATGAG
  GAAGTAGGCA GTAACACTGC TGACTTGTTC AAAACTCAAC TTGAATTCTA CTACTTTTCT
  ATCTTAGTAT TCTCATCTAG TCTATGAATT TTAAACATTT TCCATCTCAA ACGAGTTATC
  TTTTTATGAC CAGCTGGCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

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SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss136011652	ENSMUSSNP3382864	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G		A
ss320999831	CHEV_3_141936366	CHEVERUD	SCREENING_POP	f	SNP				A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs47303143					SNP	G	G	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141979163 () rs orientation: forward

Symbol	Name	Function Class
Pdlim5	PDZ and LIM domain 5	Intron
Rr398078	regulatory region 398078	1699 bp upstream
Rr586404	regulatory region 586404	1098 bp proximal
Rr586405	regulatory region 586405	1702 bp proximal
Rr586406	regulatory region 586406	1830 bp proximal