rs47302363 SNP Detail

Summary

• ID
  rs47302363
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:128172052 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             AGGGGCGTAC TTTTCTTGCC AAGCGCGCTC CGGTGCGCGT CCCCAGGGGG
  Y
  GGCTGTCGGG CGTACGGGCT GGCTGGGTCC TCAGACCGGG GCCCGGATTA           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60797495	NES16471202	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs47302363					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60797495	NES16471202	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:128172052 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm41949	predicted gene, 41949			244 bp upstream
Gm71087	predicted gene, 71087			within coordinates
Rr396256	regulatory region 396256			within coordinates
Rr417725	regulatory region 417725			143 bp distal
Rr417726	regulatory region 417726			within coordinates
Rr417727	regulatory region 417727			139 bp proximal
Tssr8523	transcription start site region 8523			140 bp downstream
Tssr8524	transcription start site region 8524			116 bp downstream
Tssr8525	transcription start site region 8525			66 bp downstream
Tssr8526	transcription start site region 8526			within coordinates
Tssr8527	transcription start site region 8527			27 bp upstream
Tssr8528	transcription start site region 8528			117 bp upstream
Tssr8529	transcription start site region 8529			269 bp upstream
Tssr8530	transcription start site region 8530			441 bp upstream
Ubxn4	UBX domain protein 4			Intron
				mRNA-UTR