rs47300784 SNP Detail

Summary

• ID
  rs47300784
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:107226345 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A TACACAGCTA GGTGTGATGG CCCAGTGTCC TGGGAGGCAG
  AGGCAGGACG ACCTGAGTTC AAGGCCAATC TGGGGCATAT ATATAGTAAA TCCCTAGAGG
  Y
  GCAGTAAAAA AGAAAAGGAA GCCACACAAG TATTTATCCT TTTGTCTTTT CCTTAAAAAA
  GGAAAAGAAA AGTTGGCTTA TTTGTATTTT TCATGTGTAT A                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss147178155	ENSMUSSNP2948230	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs47300784					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107226345 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ndc1	NDC1 transmembrane nucleoporin			Intron
				Noncoding-Transcript-Variant
Rr367664	regulatory region 367664			1261 bp downstream
Rr596979	regulatory region 596979			1354 bp distal
Rr596980	regulatory region 596980			1759 bp distal
Rr596981	regulatory region 596981			469 bp distal
Rr596982	regulatory region 596982			1287 bp distal
Rr596983	regulatory region 596983			843 bp distal
Tssr38245	transcription start site region 38245			1394 bp downstream
Tssr38246	transcription start site region 38246			1335 bp downstream
Tssr38247	transcription start site region 38247			1110 bp downstream
Tssr38248	transcription start site region 38248			1091 bp downstream
Tssr38249	transcription start site region 38249			1076 bp downstream
Tssr38250	transcription start site region 38250			1064 bp downstream
Tssr38251	transcription start site region 38251			808 bp downstream