rs47299140 SNP Detail

Summary

• ID
  rs47299140
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108513699 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TATGACTTTC ACAACAGCGT CACAGGATCT GTGGTCTGCT
  GCTGCTGCTC TCTCTGTACA CAGCTATAGC TATATCCTCA GGAATGCACA CTTTCAATTG
  K
  GTTAACTGCA GAGAGGGAAG GGCTCCCTCT CAGGAGGCCA TGGGTTCTCT GGAGTCTTTC
  TCAGAACAGC TCCTCCACTT GAACCTGGGA AGAAAAAAA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133504454	ENSMUSSNP1067790	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47299140					SNP	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108513699 () rs orientation: forward

Symbol	Name	Function Class
Itpr1	inositol 1,4,5-trisphosphate receptor 1	Intron
Rr636129	regulatory region 636129	1200 bp distal
Rr636130	regulatory region 636130	within coordinates
Rr636131	regulatory region 636131	1497 bp proximal