rs47298199 SNP Detail

Summary

• ID
  rs47298199
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:155831998 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAAACTGCTC AGGCTGGTTA CTGGCCAGGA CCAGCATGAA
  CCTGCAGCCA CAAAGTGCAT TTGTCCAATC ACCAGTCACT CAGAGACAGA AGGGCCTCTT
  Y
  TTTTTTTTTT TTTTTTTTTG GTTTTTCGAG ACAGGGTTTC TCTGTGTAGC TCTGGCTGTC
  CTGGAACTCA CTCTGTAGAC CAGGCTGGCC TCGAATTCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss148115219	ENSMUSSNP243505	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss321442767	CHEV_4_155121650	CHEVERUD	SCREENING_POP	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs47298199					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155831998 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Atad3a	ATPase family, AAA domain containing 3A			Intron
				Noncoding-Transcript-Variant
Rr606559	regulatory region 606559			1864 bp proximal
Rr606560	regulatory region 606560			1985 bp proximal