rs47292910 SNP Detail

Summary

• ID
  rs47292910
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153084544 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTACAGAC ATAAAGGTCT
  ATGAGCTATT CTTCTCGGAG TACCTTCCTA TAATTTCTGC TAACTCTTTC TCATCCTTGA
  AGTCTCAACA TACGTGTCAC CAAAGAGGAC TCCATTGACC TCTCTACTTG TCATTTCCTG
  AGTCTCCCTG TCACCAAACC TTTTCATTTT TTCCCTTGCA ATCATCAAAA TATACCATAA
  T
  GAATTTGTTT TCATGTTTAG TGTCTCCTAA CCTGAATTAG AATGGAATGC CTTGAGGACA
  GAAACCTTAT CCTTCTGATT TTATATTATA ACATCTAGCA CAGTACCTGG CACATTTCAG
  CCTTGCAGTG TTTCTGGAAT GGATGAATGG CTGCCATATT GATGATAGCC AAATGTGCTT
  GCATACAACT TTAATCTCAG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss147988452	ENSMUSSNP4400679	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs47292910					SNP	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153084544 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12482	CpG island 12482	732 bp distal
Plagl2	pleiomorphic adenoma gene-like 2	1266 bp upstream
Pofut1	protein O-fucosyltransferase 1	Intron
Rr567588	regulatory region 567588	1209 bp distal
Rr567589	regulatory region 567589	1036 bp distal
Rr567590	regulatory region 567590	647 bp distal
Tssr20880	transcription start site region 20880	1698 bp downstream
Tssr20881	transcription start site region 20881	1681 bp downstream
Tssr20882	transcription start site region 20882	1158 bp downstream
Tssr20883	transcription start site region 20883	1021 bp downstream
Tssr20884	transcription start site region 20884	1006 bp downstream
Tssr26895	transcription start site region 26895	1270 bp upstream
Tssr26896	transcription start site region 26896	1230 bp upstream
Tssr26897	transcription start site region 26897	1213 bp upstream
Tssr26898	transcription start site region 26898	1124 bp upstream
Tssr26899	transcription start site region 26899	900 bp upstream