rs47292546 SNP Detail

Summary

• ID
  rs47292546
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:72284463 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G GTATGGGAGG TTAGGTCAGA GCCACCTTCT CTTCCAACAG
  ATCACCATCG GAAGGCTGAG AAGCACTGGT TGTCACTGTA GGAAAAAAGT ACATTAATTT
  C
  TCAAAAAAAA AAAAAAAAAC AGTTCACCAA TAGTAAGCAT CTCTTCTGTC CTCCAAACCC
  ATGGTAGCCT CTGCCAGTGC CTTGTCAGAT GAGGATTGTC C                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss133283793	ENSMUSSNP973001	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs47292546					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72284463 () rs orientation: forward

Symbol	Name	Function Class
Rr632127	regulatory region 632127	989 bp proximal
Sftpb	surfactant associated protein B	Intron
Tssr57084	transcription start site region 57084	1819 bp downstream
Tssr57085	transcription start site region 57085	1582 bp downstream
Tssr57086	transcription start site region 57086	1537 bp downstream
Tssr57087	transcription start site region 57087	1502 bp downstream
Tssr57088	transcription start site region 57088	1450 bp downstream
Tssr57089	transcription start site region 57089	689 bp downstream
Tssr57090	transcription start site region 57090	614 bp downstream
Tssr57091	transcription start site region 57091	552 bp downstream
Tssr57092	transcription start site region 57092	267 bp downstream