rs47291485 SNP Detail

Summary

• ID
  rs47291485
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:89045701 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCTACCATA TCTGCTCAGC TTTTACACAG ATTCTGTTCA
  TCTGAACTCC AGCCCTCAAA CTTGCATGGC AAGGGCTTTA TCCACTGAGT CCTCTTCCTA
  R
  CCCAGTACTT TATTTTAAAA ACAAGAATCA CCGGTGAGCT GAAGGAAATG TGTCTGTTTC
  AAAAACTGCC CAGGCCCCTC CCACAGTGCT GCACTCTGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss146946524	ENSMUSSNP4703871	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss321204644	CHEV_4_88773368	CHEVERUD	SCREENING_POP	f	SNP		G	G
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs47291485					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:89045701 () rs orientation: forward

Symbol	Name	Function Class
Gm12602	predicted gene 12602	within coordinates
Gm68733	predicted gene, 68733	within coordinates
Rr398332	regulatory region 398332	1807 bp upstream
Rr595153	regulatory region 595153	497 bp proximal
Rr595154	regulatory region 595154	728 bp proximal
Rr595155	regulatory region 595155	777 bp proximal
Rr595156	regulatory region 595156	1123 bp proximal
Rr595157	regulatory region 595157	1739 bp proximal
Rr595158	regulatory region 595158	1953 bp proximal
Tssr42402	transcription start site region 42402	908 bp upstream
Tssr42403	transcription start site region 42403	753 bp downstream