rs47287851 SNP Detail

Summary

• ID
  rs47287851
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:142015380 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTACAAATC TTTTGCAAAA
  TTAAGTTAAT TTTTGCAAAA ACTGAGGATT CATGCTGTTT ATTCATATAT AAATCACCAT
  ATCTGCTTTC CAGTAATGTA GATACTAACT TTGTCACGTG TGTTTTCTGT AAAGAGAAAA
  GCATTTTAAA CCATTATTTG AATACACCAT TAATGTTTGC ATCTTTTGAG GCTGATTCTT
  Y
  AAAACACCAC ATACAAACTG TTAATGTTGC AGCCAAAGAA GACTGAAATT AATGGAGGAT
  ACACAAAAGG ACTTACCTCC TGAGAGCAGT GGCACATTAT AATGCAGGAC ATGTGGACAG
  TGAAACGCAA ATCAGTTAAT CTATTTCGTG TAAGGCAGTT TGTTTCTAGT CAGGAATGTA
  AACCCTGTTC TATTCTTCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61087816	NES16611417	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47287851					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61087816	NES16611417	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142015380 () rs orientation: forward

Symbol	Name	Function Class
Pdlim5	PDZ and LIM domain 5	Intron
Rr586413	regulatory region 586413	872 bp proximal
Rr586414	regulatory region 586414	1543 bp proximal