rs47287847 SNP Detail

Summary

• ID
  rs47287847
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146796886 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATCTGAAGT TAGCTGCTAA TTCTTGGGAT TTGTCAATAG
  GGACAGAAGA AACAGCCATT CACGGCTGGA TTGATGTTTA TTTCATTTGA GGCAGGGTCT
  S
  TAGTAGTCCA GGCTGACTTT GATTTAACTG TAGCGCAGGA TAGCCTTAAA CTCCCAATTC
  TCTTGCTTTC TCCCTTGTGC TTAGACTTAC AGACTTTGA                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss136047123	ENSMUSSNP1386242	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss321011270	CHEV_3_146754095	CHEVERUD	SCREENING_POP	f	SNP			C	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47287847					SNP	G	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146796886 () rs orientation: forward

Symbol	Name	Function Class
Gm29771	predicted gene, 29771	within coordinates
Rr375880	regulatory region 375880	793 bp upstream
Rr587122	regulatory region 587122	1151 bp proximal
Rr587123	regulatory region 587123	1518 bp proximal
Rr587124	regulatory region 587124	1623 bp proximal