rs47283259 SNP Detail

Summary

• ID
  rs47283259
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:60412876 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A TTCATTAATT GAAAAGCAGC TCCTTGGAAA GGATTAATTG
  ACATATACCA TATTTATAGA CATTTTTTGT TTTAAGAATT GAGATAGGGA AACTGATGAA
  Y
  AATAGTGTTT TCATATTTAT ATTTTTATGT AAACACTGCG ATATTCTTGG GAGAAATAAA
  AGTCCTAGCA TATCCATGGT TATGTTTTGA TACATATTAT T                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss135219296	ENSMUSSNP645915	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs47283259					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:60412876 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mbnl1	muscleblind like splicing regulator 1			Intron
				Noncoding-Transcript-Variant
Rr577411	regulatory region 577411			1935 bp distal
Rr577412	regulatory region 577412			139 bp distal
Tssr29286	transcription start site region 29286			417 bp downstream