rs47278871 SNP Detail

Summary

• ID
  rs47278871
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121997810 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGTAGGGCT GGAATAATCA AGAGGCCGAG CTGAGACTCT
  GGTTTCTTTC CTCTTTCTCG ATTTTAGGAT TTGTTTATCT ATTTATTTAA AGTCACCTGG
  Y
  AAGGTGACCT ACAAGTTTGA TCCCGGCTCA GGAGGCAGAA ACAGAAGGAT CTCTGTGACA
  GCCTGGTCTA CATCGTAAGT TCCAGAAAAG CTAGGGTTA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss135737018	ENSMUSSNP2098170	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320909580	CHEV_3_121907079	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs47278871					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121997810 () rs orientation: forward

Symbol	Name	Function Class
D3Jor1	DNA segment, Chr 3, Barbara Jordan 1	within coordinates
Gm43158	predicted gene 43158	within coordinates
Gm46822	predicted gene, 46822	within coordinates
Rr584257	regulatory region 584257	1381 bp distal
Rr584258	regulatory region 584258	516 bp distal
Rr584259	regulatory region 584259	1729 bp proximal