rs47274971 SNP Detail

Summary

• ID
  rs47274971
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164711573 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCAC CTACAGACTT CCAGAGAAAC
  Y
  GGGAACAACG TTAAGTATGC AGGAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148232481	ENSMUSSNP7009522	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
ss320606989	CHEV_2_164695153	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47274971					SNP	T	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164711573 () rs orientation: forward

Symbol	Name	Function Class
D2Mit227	DNA segment, Chr 2, Massachusetts Institute of Technology 227	69 bp distal
D2Mit342	DNA segment, Chr 2, Massachusetts Institute of Technology 342	77 bp distal
Gm75526	predicted gene, 75526	within coordinates
Rr374207	regulatory region 374207	1199 bp downstream
Rr569739	regulatory region 569739	1530 bp distal
Rr569740	regulatory region 569740	1895 bp distal
Rr569741	regulatory region 569741	809 bp distal
Rr569742	regulatory region 569742	1877 bp proximal