rs47271479 SNP Detail

Summary

• ID
  rs47271479
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23924662 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTCCCAGTG TTTTGAGCCC TCACTTTAAA TGAGCGAACA
  GCTGTTTTAG TACAGAGCAT GATAAATAGA CCCATCTTCC CAATTCCATG CCCTCGGGAC
  T
  GACTCTCTCG ATTCTTCCCA GCTTTTATTT CATGTTTGTC ATAGGTTAAA TTCCTCGAAT
  AACCTGAATC TCAACTTTCT GCGTCTTTTT TTGTAGTTT                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss148807865	ENSMUSSNP4171325	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	A/J
rs47271479					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23924662 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5372	CpG island 5372	617 bp distal
Gm60901	predicted gene, 60901	1622 bp upstream
H1f2	H1.2 linker histone, cluster member	1148 bp downstream
Rr369656	regulatory region 369656	141 bp downstream
Rr388130	regulatory region 388130	977 bp upstream
Rr475930	regulatory region 475930	1861 bp distal
Rr475931	regulatory region 475931	1493 bp distal
Rr475932	regulatory region 475932	1132 bp proximal
Rr475933	regulatory region 475933	1633 bp proximal
Tssr118854	transcription start site region 118854	1870 bp downstream
Tssr118855	transcription start site region 118855	1481 bp downstream
Tssr118856	transcription start site region 118856	744 bp downstream
Tssr118857	transcription start site region 118857	504 bp downstream
Tssr118858	transcription start site region 118858	1622 bp upstream