rs47268777 SNP Detail

Summary

• ID
  rs47268777
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:149840168 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTTAGAAC GTAACAGCTT
  AGTATGTGCG GGGTGTGTGG CTTCATTGGT AGTGTGTTTG CTTGGTATGC TTGAGTAGCA
  TGCACAAAGC CCTGGGTTGA ATTTTCCCAG CACTGTATAA CCCACACAAA CTGGTGCATA
  TCCATAATTC CAGCACTCTG CAGGTAGAGG CAAGAGAATC ACTATGATTC CAAGACGAGA
  G
  CTACTCAGTG GGTTCCAGGC TAGCCTAGGC TACAAAGTGC AGCCTTACCA GAAGAACAAG
  AGGAGGAAGA GGAAGAGAAG GCTGCTGCTG CTGAGCCAGG CATGTACTCT ATATATGAAG
  ACACAGAGAT CATAAGTTCA AGGTCATCCT AGACTATATA GGGAGTTGAG GTCAGTCTAG
  GCTAGAGACC CCTGTCTTTA                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	MSM/Ms
ss134502955	ENSMUSSNP5681660	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	MSM/Ms
rs47268777					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:149840168 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
DXMit153	DNA segment, Chr X, Massachusetts Institute of Technology 153			1171 bp distal
Fgd1	FYVE, RhoGEF and PH domain containing 1			Intron
				Noncoding-Transcript-Variant
Rr694365	regulatory region 694365			1262 bp distal