rs47266190 SNP Detail

Summary

• ID
  rs47266190
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:125196964 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGAATGCT GCTTGAAGAT
  TTTATAAACA TAAACTTTTT CTCAACTCAC TGTGCATGAG AATTTAGGCA ATTTGCAGAC
  AAATGTTATG CAGACGTTAA CACCAATAAT ACTGGATACA GACATCATAA AGCCAAGCTT
  TAATGGCTTC TCCACTACTT CCACCCCCCT CTCTAGTCAC GGGATTTTAC TGAAATTGTC
  Y
  GAATATTACA TGTATTGCTT ATAACTGAAG ACACACACAC CAGATTAGAG AGTATTCTGC
  AGCTCTATTC TGTCTTGAAA CAAGTTTTCA TTTTTTTTCT TGTATATTTA TATTTAAATA
  TATATATGAA TATATATATA TATAATTTTT AAATTTGAGA AATAGAAATG TAGTTTCCCA
  TAGGAATCAA ATTTTACCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61078014	NES16589249	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	T	C	T	C	C	C	C		T	C	C	T		C
ss320936160	CHEV_3_125106233	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs47266190					SNP	C	T	C	T	C	T	C	C	C	C	C	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61078014	NES16589249	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:125196964 () rs orientation: forward

Symbol	Name	Function Class
Ndst4	N-deacetylase/N-sulfotransferase (heparin glucosaminyl) 4	761 bp upstream
Rr584608	regulatory region 584608	277 bp proximal
Rr584609	regulatory region 584609	772 bp proximal
Tssr31558	transcription start site region 31558	757 bp upstream
Tssr31559	transcription start site region 31559	1010 bp upstream