rs47264873 SNP Detail

Summary

• ID
  rs47264873
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:71697282 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACAA TGTTTCCAAA GCCAGGTGTT
  W
  AGTAGTCCTT GTTTTTAATC ACAGC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss146751457	ENSMUSSNP6592182	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	A		T
ss320340932	CHEV_2_71704995	CHEVERUD	SCREENING_POP	f	SNP				T		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs47264873					SNP	T	T	A	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:71697282 () rs orientation: forward

Symbol	Name	Function Class
Gm74965	predicted gene, 74965	within coordinates
Gm75575	predicted gene, 75575	1542 bp upstream
Rr370575	regulatory region 370575	within coordinates
Rr558852	regulatory region 558852	700 bp distal
Rr558853	regulatory region 558853	within coordinates
Rr558854	regulatory region 558854	604 bp proximal
Tssr18292	transcription start site region 18292	806 bp downstream
Tssr18293	transcription start site region 18293	816 bp upstream
Tssr18294	transcription start site region 18294	1569 bp upstream
Tssr18295	transcription start site region 18295	1576 bp upstream
Tssr24499	transcription start site region 24499	613 bp downstream
Tssr24500	transcription start site region 24500	1368 bp downstream