rs47256431 SNP Detail

Summary

• ID
  rs47256431
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148142572 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C CTATTCCTGT AGGGGGCCAG TGGAGGGCCC GTGCAGGCAG
  TGGCAGCCAG AACTCGAGGG CTGGGCAGAG GGGTCTCTCT GTGACACCTG AAAAGGAGAC
  K
  TGGGTCAGGA GAGGATGATG CCTTGATTTA AAAGAACAGA AGCCCCACCC ACCTACCCCT
  CAAGTCTCCA GGCTGTGGGC TGGCCCAAGG CGCTAATGGG A                    
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss147990923	ENSMUSSNP1872560	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs47256431					SNP	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148142572 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm13201	predicted gene 13201			within coordinates
Gm66468	predicted gene, 66468			within coordinates
Mthfr	methylenetetrahydrofolate reductase			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr604566	regulatory region 604566			777 bp distal
Rr604567	regulatory region 604567			367 bp distal
Rr604568	regulatory region 604568			1048 bp proximal