rs47253098 SNP Detail

Summary

• ID
  rs47253098
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:155587536 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACATACAG ACAATGTGAG
  ATTGGTGTCC AGGGTGACAG TGAGCCAGCA ACCAAATGGG CTTTATTGCA AAATGCGAAT
  AAAAGCACGT AAGCTTAGTA AGCCAGCTTG CTACCATTTT CTTGGACTCT CTTCTCCTGT
  TAACACTATG TAGCCAGTAG TTTTCTAATT CATGTTTGTT TGTTCAGTAA GTTTGAGTAG
  Y
  TTCTAACCTC ATGAAATCTG ATTATTTATA ACAACATATA GAAAAAGTGA TGAGCCATCA
  GTACCTCTAG GTTCACTTTT TATATCCATA TCCTCCCACA GAAGATATAT TTTGTAGGAC
  TATCTTAACT CACATGTTAA AAGAAAAAAT ATTCTATCAC AAATTACTTA TGTTGAGGTA
  CAAGAAGCAA ACCCATTTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61102476	NES16627820	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C		C	C	T		T
ss321032716	CHEV_3_155544863	CHEVERUD	SCREENING_POP	f	SNP											T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs47253098					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61102476	NES16627820	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:155587536 () rs orientation: forward

Symbol	Name	Function Class
Rr587941	regulatory region 587941	892 bp proximal