rs47253029 SNP Detail

Summary

• ID
  rs47253029
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102379532 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTATAGAAA ACGCTACCGA
  TTGTACGTCT TGACTAATGG TTAAACTTAC TTTTATGTGG GTATCACCTT TGAAGCTGTA
  CACCATAGTG ATTAGGACTA CCGTCTGTGG ATCTGATAAT CATAGGCTCA AACCTCAGAG
  CTGTGCCCCT CACTTGTGTG ACCTTAGACT CTCAAGGACT CCTTTTCCCT GTTTGTGGAA
  W
  AGAGACACTC GGGTCCTGCC TGTATGCTCT TGGGGAGTAT CTTGTGCTGC CCCACCATCA
  TGAACTCAGA TCAGGATTTC CCAGTAGCCT GTGTGTGCAG TTGCTCAGAG CAGAAAAGGG
  GAAAGAAAGC GCTTGGAGGT AGAGCAGTGT TGAGAGGGGA GTGCAGGTGG GTTTACTCTA
  TCCTCCCATC GCCTGTTGGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss147115219	ENSMUSSNP4376057	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
ss320438732	CHEV_2_102389344	CHEVERUD	SCREENING_POP	f	SNP			A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs47253029					SNP	T	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102379532 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11977	CpG island 11977	579 bp proximal
Pamr1	peptidase domain containing associated with muscle regeneration 1	825 bp upstream
Rr561703	regulatory region 561703	444 bp proximal
Rr561704	regulatory region 561704	1716 bp proximal
Tssr19094	transcription start site region 19094	858 bp upstream
Tssr19095	transcription start site region 19095	912 bp upstream
Tssr19096	transcription start site region 19096	930 bp upstream
Tssr19097	transcription start site region 19097	951 bp upstream