rs47251236 SNP Detail

Summary

• ID
  rs47251236
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:51918320 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGGAGTGC TGCAGCTCCC
  TCAAGCTCCC AGAGCAAGCC AGTGGGAGCA TGGAAGGCCC AGGCTTCCTG ACTTCAACCC
  ATGCATGGCG CTGAACCAGG ACTGGCTACT ATGACTGTGA CTGCTATGAC CAGCCTGTCT
  CCTCTCTGTG TGCACATTTG CACCAGCATT TCAGGGATGT TCACGTTTCT CATGAGCTAC
  Y
  TCATACTTTC ATGAAATGGA CTAAGGACAA ATAATGGGGA GGTAGCAGGC TTTACTGAAA
  CCCAGATGTG TTTCAAACAC AGGCTAGAAT GAAGGCTGAC TCTGCCGGCC TGTGCCTGCC
  AAACCCTGTA ATGTCTGTAA ACTAAAATGT GCGCTGAGTG AAAAGCTACC AAGCAAGTAA
  TCACACTCAG TCTCTGAGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60411342	NES15908543	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47251236					SNP	C	C	C	C	C	C	C	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60411342	NES15908543	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51918320 () rs orientation: forward

Symbol	Name	Function Class
Maml3	mastermind like transcriptional coactivator 3	Intron
Rr576436	regulatory region 576436	1331 bp distal
Rr576437	regulatory region 576437	177 bp proximal
Tssr876	transcription start site region 876	1678 bp upstream
Tssr33242	transcription start site region 33242	1804 bp upstream
Tssr33243	transcription start site region 33243	1742 bp upstream
Tssr33244	transcription start site region 33244	1718 bp upstream
Tssr33245	transcription start site region 33245	1659 bp upstream