rs47247252 SNP Detail

Summary

• ID
  rs47247252
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152986359 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATGTGAGA GTTAAGAAAA
  ACAAAAACAA CCAAAGGGGG GAAAAACAAA AACAAAACAA AACAAAAAGC CAAACAAAAA
  CCCCAACCTA AGTACAAAAT TAAATGTCCA AAGCAAAGGA AAAAAAATCA AAGCAACTGT
  TAGAGACAGA GATTTGGGGG TCTTCTGTGG TCTCTTCCCT CACATGGGGG TGCATGTGAG
  K
  GAGGGGTACA GATGACTAAG CCTCCTTAGC TCCAGCTGAA TCTCTGCTGG AGAGTGGGTA
  CACTAGCCCA CCAGGGCTCA CTCCCCCTCA CCCCTGCTGG CACCCAGTTA TCCTTACTGG
  ACTTGGGATG TGCAGTGCTT TGATGAGAAC TCGCCCCCAT CTGCTTCGGT GTTTGAATGT
  TTAGTCTCTG GTCAGGCACA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136107362	ENSMUSSNP211289	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T	T
ss321030474	CHEV_3_152943686	CHEVERUD	SCREENING_POP	f	SNP				G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47247252					SNP	G	T	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152986359 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr587669	regulatory region 587669			1406 bp proximal
St6galnac3	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant