rs47245352 SNP Detail

Summary

• ID
  rs47245352
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:93966106 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAAGCCGG GCTTGAGCGG
  GGTGATGCCT GCCCTACTTA GCCTAGAACC TCAGTCCAGC CCTGCAACTC TTCCTCCCCA
  TCGCCTCTGC CCCAACACAC CCACAAGTAG AACAGCACTT CTTAAAGCTT TTGGTACCAT
  TTAATTATAA CGGGCTTAAA CCAAAGGAAA GGGACTTAAG CCCTGGTCAT TTTGGGTGCC
  Y
  ACCAGACAGC TAGACTCTTG CTACCCTGAC TGTCTGAAGT GCTTGCTCAT TTCAGAGTCC
  TAGGTGTGAA GGAGAGCCAG AACCCAACTC CAGGACAGAG TGAATGAGGA GATTCTAACA
  CCCCAGTGTT GGTTTGCGTC AAGGTTATAT CCCCCTTTCC TCCCTGCTGT CAACATGGAC
  TTTGTCCTTT TGGTTCCTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60768976	NES16410932	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47245352					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60768976	NES16410932	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:93966106 () rs orientation: forward

Symbol	Name	Function Class
Pdcd1	programmed cell death 1	mRNA-UTR
Rr416095	regulatory region 416095	1920 bp distal