rs47241383 SNP Detail

Summary

• ID
  rs47241383
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:50789236 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGAAGTCT CAAATTCACT
  CAAACCATGA GGCAGGGGCT CCTCACCTAG CAGCTGGGTT CTGACCAGAA GTTTGGGGGG
  TTTGGGGTTA TGCCAAGTTT ACTGGGCAAT TTACACGCTA CATGTCATGA AATCCTTCCA
  GCCTCTGGGC TGGCCTCTTG CAATAGACAT ATTTGATAAG GAGGCTGGGG TTCCTGTGCT
  Y
  CCGATAGACA TCATGAGTGT TACATAGCTA TTGGGTGAGA CTCAGAGCTC AGGCTACTAG
  ATGTCCCAAG TGACTGAGGG TACATCCATC TCCTGTCTCC CCAGCCGCTA GAACTCAACC
  TGTCAGGCTT TGTATGGGAA GGGTTTTACC CACTGAACCA TCTTACTGGC CCCACAAAAT
  GTCTCTGTGT ATAACTGATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133184932	ENSMUSSNP3422305	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47241383					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50789236 () rs orientation: forward

Symbol	Name	Function Class
C530044C16Rik	RIKEN cDNA C530044C16 gene	within coordinates
Gm31455	predicted gene, 31455	within coordinates
Gm44109	predicted gene, 44109	within coordinates
Rr543	regulatory region 543	within coordinates
Rr1255	regulatory region 1255	435 bp distal
Rr630076	regulatory region 630076	383 bp proximal