rs47239953 SNP Detail

Summary

• ID
  rs47239953
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:89156261 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTGAACAA GTGTTCAGGC
  ACAAGGCATT TGAAATCCCT GCTTTTATTA AGGCATACCT ATTTTGTTTG TGTTGTTTTT
  CTAGTCAGGA TTTCTCTGTG TAGCCCTGGC TGTCCTGGAA CTCCCTCTGT AGAGGAAGCT
  GACCTCCAGC TCACAGAGAT CTCTCTGACT CTGCCTCTAG TGCTGGGGTT AAAGGTGTAT
  R
  TCCCCATGCC AGGCAGGACG TACGTTTTCA AGCAGGTTCC TCACAGGGTT CTAGACTGCT
  CCTACTTTTC CGTTGCTCTT TTGACCGCCT TCTGATTGAC CCTCTTCCTG TCTCCCCAGT
  TCTCCTCTGC TTGCTGTTGG CGCTCTTTGC CTCCGGCCTC ATCCACCGAG TTTGTGTCAC
  CACTTGGTAC GTATCTGACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss135474287	ENSMUSSNP6365302	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs47239953					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89156261 () rs orientation: forward

Symbol	Name	Function Class
Krtcap2	keratinocyte associated protein 2	Intron
Rr580001	regulatory region 580001	1299 bp proximal
Rr580002	regulatory region 580002	1380 bp proximal
Rr580003	regulatory region 580003	1597 bp proximal
Rr580004	regulatory region 580004	1641 bp proximal