rs47238675 SNP Detail

Summary

• ID
  rs47238675
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:116014432 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCTGAACC TGTAAGCCAA
  TTAAACCTGT AAGCCCCAAT TAAATGCTGT CCTTTATAAA AAATAATAAT AATAAAAATA
  AAAAGTAAAA GCATCTCACG CGGCTGCCAG AGATGTAACG GCCCATGCTT AAGACTTCCT
  TTACTTATGT TCAAACTCCC AGGAAATACC AAACTGAGTT TTTCTACGTG CTGGATGAAA
  C
  ACATTTCAAG CCCACTCTGG AGACTTGAAA AAGGTGTGTG GTGATCTCGG GTCTATCGAA
  CAGGGAGGGG CGGCAGAGGA GGGAACACAG CACACCTCAG ACAGCATCTT TAACTGCATT
  ACACATCTGC CTGGGGCAGG CTCACTGCTC TGAGCCACTC CTGGCACCTT GGCATTTGCT
  TTGATAATCG AACACCCCTT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	MSM/Ms
ss135669509	ENSMUSSNP5855057	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	MSM/Ms
rs47238675					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116014432 () rs orientation: forward

Symbol	Name	Function Class
Rr583673	regulatory region 583673	141 bp proximal
Rr583674	regulatory region 583674	1728 bp proximal