rs47236577 SNP Detail

Summary

• ID
  rs47236577
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:40458450 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGTTAGGC CCCTATGGCA
  ATCCTTAAGA AGGTTCAAGT TATCAGCGGG AGAGAAGTAC TACATGTCCA GCATGCCACT
  GTCTGCCCGA CAGTAACAAT CATTGACCTA AATGCCAGTC AGGCATAAAC TCTTTCTGGG
  ACCCACTCAG CTCCAAGCTG ACACAAGTGC CTAAGACACA GTGGTTTTCA TTGAGGATCT
  K
  GATGAGAAGC ATCCATGGGT TTCCAGTTTG ACCCTCGAGT CCGTATACTT ACCAGAACTT
  CTGGGTACTG TACTGATTAT CTTCCCTTAA GTCTAATCCA CTTCCTTCAT CACTTGAACA
  GAGAAAATTT AAATGTTCTA GTTCAGGTTA AACTCAGTTC ATTTGGGGCT CTCTCAGCCA
  AATGTGAAAT AACTCAAACC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60393729	NES15889392	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	G	G	T	G	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47236577					SNP	T	T	T	T	T	T	G	T	T	G	G	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60393729	NES15889392	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:40458450 () rs orientation: forward

Symbol	Name	Function Class
Rr575811	regulatory region 575811	1207 bp proximal